Here is an update....
I am retarded......
I'm pretty sure I fixed the problem, I just got done playing a couple games and didn't have any of the troubles I was having before!
I can't believe that I missed something so simple.... Remember how we told all of you guy's to check the box "configure word" in the boot-loader program? Well I totally forgot to do that!
So after going back and erasing the chip, and then checking that box and loading the Works driver onto the controller it worked great...... I can't believe I was pulling my hair out over something so stupid!!! hahaha, oh well.....